STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d20Rab-GAP TBC domain-containing protein. (397 aa)    
Predicted Functional Partners:
rab1a
Uncharacterized protein.
    
 0.897
rab19
Ras-related protein Rab-19.
    
 0.693
Rab33b
Uncharacterized protein.
    
 0.680
ENSCMIP00000005545
Uncharacterized protein.
    
 0.670
rab43
Uncharacterized protein.
    
 0.646
ENSCMIP00000014657
Uncharacterized protein.
    
 0.645
cgnl1
Uncharacterized protein.
    
 0.645
tbc1d16
Rab-GAP TBC domain-containing protein.
      
 0.594
rab3gap2
Uncharacterized protein.
      
 0.580
Rab2a
Ras-related protein Rab-2A.
     
 0.568
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.