mdga2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mdga2

Uncharacterized protein. (964 aa)

Predicted Functional Partners:

ENSCMIP00000001088

0.548

nlgn1

0.548

ENSCMIP00000006192

0.548

ENSCMIP00000009559

0.548

LOC103173509

0.548

Nlgn3

0.548

ttr

0.422

tmem216

0.410

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001088	ENSCMIP00000009559	ENSCMIP00000001088	ENSCMIP00000009559	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000001088	LOC103173509	ENSCMIP00000001088	ENSCMIP00000010630	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000001088	mdga2	ENSCMIP00000001088	ENSCMIP00000005653	COesterase domain-containing protein.	Uncharacterized protein.	0.548
ENSCMIP00000006192	ENSCMIP00000009559	ENSCMIP00000006192	ENSCMIP00000009559	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000006192	LOC103173509	ENSCMIP00000006192	ENSCMIP00000010630	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000006192	Nlgn3	ENSCMIP00000006192	ENSCMIP00000025044	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000006192	mdga2	ENSCMIP00000006192	ENSCMIP00000005653	COesterase domain-containing protein.	Uncharacterized protein.	0.548
ENSCMIP00000006192	nlgn1	ENSCMIP00000006192	ENSCMIP00000003085	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000009559	ENSCMIP00000001088	ENSCMIP00000009559	ENSCMIP00000001088	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000009559	ENSCMIP00000006192	ENSCMIP00000009559	ENSCMIP00000006192	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000009559	mdga2	ENSCMIP00000009559	ENSCMIP00000005653	COesterase domain-containing protein.	Uncharacterized protein.	0.548
LOC103173509	ENSCMIP00000001088	ENSCMIP00000010630	ENSCMIP00000001088	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
LOC103173509	ENSCMIP00000006192	ENSCMIP00000010630	ENSCMIP00000006192	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
LOC103173509	mdga2	ENSCMIP00000010630	ENSCMIP00000005653	COesterase domain-containing protein.	Uncharacterized protein.	0.548
Nlgn3	ENSCMIP00000006192	ENSCMIP00000025044	ENSCMIP00000006192	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
Nlgn3	mdga2	ENSCMIP00000025044	ENSCMIP00000005653	COesterase domain-containing protein.	Uncharacterized protein.	0.548
Nlgn3	nlgn1	ENSCMIP00000025044	ENSCMIP00000003085	COesterase domain-containing protein.	COesterase domain-containing protein.	0.901
mdga2	ENSCMIP00000001088	ENSCMIP00000005653	ENSCMIP00000001088	Uncharacterized protein.	COesterase domain-containing protein.	0.548
mdga2	ENSCMIP00000006192	ENSCMIP00000005653	ENSCMIP00000006192	Uncharacterized protein.	COesterase domain-containing protein.	0.548
mdga2	ENSCMIP00000009559	ENSCMIP00000005653	ENSCMIP00000009559	Uncharacterized protein.	COesterase domain-containing protein.	0.548