Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pqbp1Uncharacterized protein. (156 aa)    
Predicted Functional Partners:
LOC103189549
Uncharacterized protein.
    
 0.986
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.946
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.797
ctnnbl1
Catenin, beta like 1.
   
 
 0.672
cwc15
Protein CWC15-like A.
   
 
  0.660
wdr77
Uncharacterized protein.
    
   0.655
aqr
Uncharacterized protein.
    
   0.655
bcas2
Uncharacterized protein.
     
  0.649
cdc5l
Cell division cycle 5-like protein.
     
  0.649
plrg1
Pleiotropic regulator 1.
     
  0.649
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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