Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppp4r3bSMK-1 domain-containing protein. (860 aa)    
Predicted Functional Partners:
ppp4r2
Uncharacterized protein.
   
 0.994
ppp4r3a
SMK-1 domain-containing protein.
  
0.990
ppp4c
Serine/threonine-protein phosphatase.
   
 
 0.985
ptpa
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.783
supt5h
Transcription elongation factor SPT5.
   
   0.732
chek2
Uncharacterized protein.
    
 
 0.732
rpa2
Replication protein A2, 32kDa.
    
 
 0.707
dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like protein.
   
 
 0.683
cramp1
SANT domain-containing protein.
    
   0.657
pskh1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.657
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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