vps13b protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

vps13b

Uncharacterized protein. (4016 aa)

Predicted Functional Partners:

gak

0.576

LOC103178972

0.553

coasy

0.475

dnajc6

0.466

Vps45

0.457

exoc2

0.457

map3k7

0.444

farsb

0.437

pgap2

0.432

rnf166

0.428

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103178972	exoc2	ENSCMIP00000040247	ENSCMIP00000047854	Phosphoglycerate kinase.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.553
LOC103178972	map3k7	ENSCMIP00000040247	ENSCMIP00000036080	Phosphoglycerate kinase.	Protein kinase domain-containing protein.	0.591
LOC103178972	pgap2	ENSCMIP00000040247	ENSCMIP00000004666	Phosphoglycerate kinase.	Post-GPI attachment to proteins factor 2-like protein.	0.551
LOC103178972	vps13b	ENSCMIP00000040247	ENSCMIP00000006010	Phosphoglycerate kinase.	Uncharacterized protein.	0.553
Vps45	vps13b	ENSCMIP00000004739	ENSCMIP00000006010	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.457
coasy	dnajc6	ENSCMIP00000018710	ENSCMIP00000036602	Bifunctional coenzyme A synthase-like protein.	Uncharacterized protein.	0.408
coasy	gak	ENSCMIP00000018710	ENSCMIP00000014450	Bifunctional coenzyme A synthase-like protein.	Uncharacterized protein.	0.556
coasy	vps13b	ENSCMIP00000018710	ENSCMIP00000006010	Bifunctional coenzyme A synthase-like protein.	Uncharacterized protein.	0.475
dnajc6	coasy	ENSCMIP00000036602	ENSCMIP00000018710	Uncharacterized protein.	Bifunctional coenzyme A synthase-like protein.	0.408
dnajc6	gak	ENSCMIP00000036602	ENSCMIP00000014450	Uncharacterized protein.	Uncharacterized protein.	0.979
dnajc6	vps13b	ENSCMIP00000036602	ENSCMIP00000006010	Uncharacterized protein.	Uncharacterized protein.	0.466
exoc2	LOC103178972	ENSCMIP00000047854	ENSCMIP00000040247	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Phosphoglycerate kinase.	0.553
exoc2	map3k7	ENSCMIP00000047854	ENSCMIP00000036080	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Protein kinase domain-containing protein.	0.555
exoc2	pgap2	ENSCMIP00000047854	ENSCMIP00000004666	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Post-GPI attachment to proteins factor 2-like protein.	0.444
exoc2	vps13b	ENSCMIP00000047854	ENSCMIP00000006010	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein.	0.457
farsb	vps13b	ENSCMIP00000042876	ENSCMIP00000006010	B5 domain-containing protein.	Uncharacterized protein.	0.437
gak	coasy	ENSCMIP00000014450	ENSCMIP00000018710	Uncharacterized protein.	Bifunctional coenzyme A synthase-like protein.	0.556
gak	dnajc6	ENSCMIP00000014450	ENSCMIP00000036602	Uncharacterized protein.	Uncharacterized protein.	0.979
gak	map3k7	ENSCMIP00000014450	ENSCMIP00000036080	Uncharacterized protein.	Protein kinase domain-containing protein.	0.405
gak	vps13b	ENSCMIP00000014450	ENSCMIP00000006010	Uncharacterized protein.	Uncharacterized protein.	0.576