psme3 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

psme3

Uncharacterized protein. (202 aa)

Predicted Functional Partners:

psma5

0.987

psmb3

0.986

psmb2

0.985

psma1

0.980

psma6

0.979

psmb4

0.979

LOC103171909

0.973

LOC103174436

0.972

psmd14

0.970

psme3ip1

0.970

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103171909	LOC103174436	ENSCMIP00000002415	ENSCMIP00000003447	Proteasome subunit alpha type.	Uncharacterized protein.	0.999
LOC103171909	psma1	ENSCMIP00000002415	ENSCMIP00000034109	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
LOC103171909	psma5	ENSCMIP00000002415	ENSCMIP00000004740	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC103171909	psma6	ENSCMIP00000002415	ENSCMIP00000003596	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
LOC103171909	psmb2	ENSCMIP00000002415	ENSCMIP00000012254	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmb3	ENSCMIP00000002415	ENSCMIP00000010819	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmb4	ENSCMIP00000002415	ENSCMIP00000005209	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmd14	ENSCMIP00000002415	ENSCMIP00000013260	Proteasome subunit alpha type.	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14.	0.999
LOC103171909	psme3	ENSCMIP00000002415	ENSCMIP00000006039	Proteasome subunit alpha type.	Uncharacterized protein.	0.973
LOC103174436	LOC103171909	ENSCMIP00000003447	ENSCMIP00000002415	Uncharacterized protein.	Proteasome subunit alpha type.	0.999
LOC103174436	psma1	ENSCMIP00000003447	ENSCMIP00000034109	Uncharacterized protein.	Proteasome endopeptidase complex.	0.999
LOC103174436	psma5	ENSCMIP00000003447	ENSCMIP00000004740	Uncharacterized protein.	Proteasome subunit alpha type.	0.999
LOC103174436	psma6	ENSCMIP00000003447	ENSCMIP00000003596	Uncharacterized protein.	Proteasome endopeptidase complex.	0.999
LOC103174436	psmb2	ENSCMIP00000003447	ENSCMIP00000012254	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmb3	ENSCMIP00000003447	ENSCMIP00000010819	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmb4	ENSCMIP00000003447	ENSCMIP00000005209	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmd14	ENSCMIP00000003447	ENSCMIP00000013260	Uncharacterized protein.	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14.	0.996
LOC103174436	psme3	ENSCMIP00000003447	ENSCMIP00000006039	Uncharacterized protein.	Uncharacterized protein.	0.972
psma1	LOC103171909	ENSCMIP00000034109	ENSCMIP00000002415	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
psma1	LOC103174436	ENSCMIP00000034109	ENSCMIP00000003447	Proteasome endopeptidase complex.	Uncharacterized protein.	0.999