STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arl13aUncharacterized protein. (172 aa)    
Predicted Functional Partners:
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.733
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.687
ric1
RIC1 domain-containing protein.
    
 0.669
pde6d
GMP_PDE_delta domain-containing protein.
     
 0.668
vps53
Vps53_N domain-containing protein.
     
 0.647
arl1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
0.645
stx16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.595
vps52
Uncharacterized protein.
   
 0.592
ift88
Uncharacterized protein.
    
 0.589
vps54
Uncharacterized protein.
     
 0.587
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.