Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdh23Uncharacterized protein. (3306 aa)    
Predicted Functional Partners:
cdhr5
Uncharacterized protein.
   
0.933
ush1c
Uncharacterized protein.
   
 
 0.928
pcdh15
Uncharacterized protein.
   
0.899
ENSCMIP00000046643
Uncharacterized protein.
   
 0.860
ctnna1
Uncharacterized protein.
   
 0.758
LOC103181503
Uncharacterized protein.
   
 0.758
LOC103178933
Uncharacterized protein.
   
 0.758
cdh12
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
 
0.705
LOC103175998
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
0.703
Cdhr4
Uncharacterized protein.
     
0.694
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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