prpf39 protein (Callorhinchus milii) - STRING interaction network

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Score

prpf39

Uncharacterized protein. (674 aa)

Predicted Functional Partners:

snrnp70

0.951

SNRPC

0.941

snrpf

0.914

rbm25

0.894

sf3b1

0.889

LOC103183390

0.883

trnau1ap

0.883

cdc5l

0.877

pnisr

0.877

snrpa1

0.874

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183390	SNRPC	ENSCMIP00000034219	ENSCMIP00000032768	tRNA selenocysteine 1-associated protein 1-like protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.784
LOC103183390	prpf39	ENSCMIP00000034219	ENSCMIP00000006119	tRNA selenocysteine 1-associated protein 1-like protein.	Uncharacterized protein.	0.883
LOC103183390	rbm25	ENSCMIP00000034219	ENSCMIP00000044527	tRNA selenocysteine 1-associated protein 1-like protein.	Uncharacterized protein.	0.740
LOC103183390	sf3b1	ENSCMIP00000034219	ENSCMIP00000029539	tRNA selenocysteine 1-associated protein 1-like protein.	TOG domain-containing protein.	0.690
LOC103183390	snrnp70	ENSCMIP00000034219	ENSCMIP00000024538	tRNA selenocysteine 1-associated protein 1-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.770
LOC103183390	snrpa1	ENSCMIP00000034219	ENSCMIP00000011176	tRNA selenocysteine 1-associated protein 1-like protein.	LRRcap domain-containing protein.	0.692
LOC103183390	snrpf	ENSCMIP00000034219	ENSCMIP00000035707	tRNA selenocysteine 1-associated protein 1-like protein.	Sm domain-containing protein.	0.686
SNRPC	LOC103183390	ENSCMIP00000032768	ENSCMIP00000034219	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	tRNA selenocysteine 1-associated protein 1-like protein.	0.784
SNRPC	prpf39	ENSCMIP00000032768	ENSCMIP00000006119	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Uncharacterized protein.	0.941
SNRPC	rbm25	ENSCMIP00000032768	ENSCMIP00000044527	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Uncharacterized protein.	0.946
SNRPC	sf3b1	ENSCMIP00000032768	ENSCMIP00000029539	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	TOG domain-containing protein.	0.937
SNRPC	snrnp70	ENSCMIP00000032768	ENSCMIP00000024538	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	U1 small nuclear ribonucleoprotein 70 kDa.	0.998
SNRPC	snrpa1	ENSCMIP00000032768	ENSCMIP00000011176	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	LRRcap domain-containing protein.	0.947
SNRPC	snrpf	ENSCMIP00000032768	ENSCMIP00000035707	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Sm domain-containing protein.	0.996
SNRPC	trnau1ap	ENSCMIP00000032768	ENSCMIP00000041591	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Uncharacterized protein.	0.784
cdc5l	prpf39	ENSCMIP00000023381	ENSCMIP00000006119	Cell division cycle 5-like protein.	Uncharacterized protein.	0.877
cdc5l	sf3b1	ENSCMIP00000023381	ENSCMIP00000029539	Cell division cycle 5-like protein.	TOG domain-containing protein.	0.973
cdc5l	snrnp70	ENSCMIP00000023381	ENSCMIP00000024538	Cell division cycle 5-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.449
cdc5l	snrpa1	ENSCMIP00000023381	ENSCMIP00000011176	Cell division cycle 5-like protein.	LRRcap domain-containing protein.	0.943
cdc5l	snrpf	ENSCMIP00000023381	ENSCMIP00000035707	Cell division cycle 5-like protein.	Sm domain-containing protein.	0.900