mcam protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

mcam

Uncharacterized protein. (99 aa)

Predicted Functional Partners:

LOC103187833

0.517

atp6v0a2

0.517

ENSCMIP00000011369

0.500

eng

0.496

ptprc

0.474

nt5e

0.463

cntn3

0.452

cntn1

0.452

cntn4

0.452

LOC103175602

0.445

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000011369	LOC103175602	ENSCMIP00000011369	ENSCMIP00000048828	Uncharacterized protein.	Uncharacterized protein.	0.679
ENSCMIP00000011369	eng	ENSCMIP00000011369	ENSCMIP00000034287	Uncharacterized protein.	Uncharacterized protein.	0.799
ENSCMIP00000011369	mcam	ENSCMIP00000011369	ENSCMIP00000006208	Uncharacterized protein.	Uncharacterized protein.	0.500
ENSCMIP00000011369	nt5e	ENSCMIP00000011369	ENSCMIP00000015555	Uncharacterized protein.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.787
ENSCMIP00000011369	ptprc	ENSCMIP00000011369	ENSCMIP00000023427	Uncharacterized protein.	Uncharacterized protein.	0.781
LOC103175602	ENSCMIP00000011369	ENSCMIP00000048828	ENSCMIP00000011369	Uncharacterized protein.	Uncharacterized protein.	0.679
LOC103175602	eng	ENSCMIP00000048828	ENSCMIP00000034287	Uncharacterized protein.	Uncharacterized protein.	0.723
LOC103175602	mcam	ENSCMIP00000048828	ENSCMIP00000006208	Uncharacterized protein.	Uncharacterized protein.	0.445
LOC103175602	nt5e	ENSCMIP00000048828	ENSCMIP00000015555	Uncharacterized protein.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.610
LOC103175602	ptprc	ENSCMIP00000048828	ENSCMIP00000023427	Uncharacterized protein.	Uncharacterized protein.	0.746
LOC103187833	atp6v0a2	ENSCMIP00000023723	ENSCMIP00000033580	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	0.902
LOC103187833	mcam	ENSCMIP00000023723	ENSCMIP00000006208	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	Uncharacterized protein.	0.517
atp6v0a2	LOC103187833	ENSCMIP00000033580	ENSCMIP00000023723	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	0.902
atp6v0a2	mcam	ENSCMIP00000033580	ENSCMIP00000006208	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	Uncharacterized protein.	0.517
cntn1	mcam	ENSCMIP00000032246	ENSCMIP00000006208	Uncharacterized protein.	Uncharacterized protein.	0.452
cntn3	cntn4	ENSCMIP00000014876	ENSCMIP00000034080	Uncharacterized protein.	Ig-like domain-containing protein.	0.906
cntn3	mcam	ENSCMIP00000014876	ENSCMIP00000006208	Uncharacterized protein.	Uncharacterized protein.	0.452
cntn4	cntn3	ENSCMIP00000034080	ENSCMIP00000014876	Ig-like domain-containing protein.	Uncharacterized protein.	0.906
cntn4	mcam	ENSCMIP00000034080	ENSCMIP00000006208	Ig-like domain-containing protein.	Uncharacterized protein.	0.452
eng	ENSCMIP00000011369	ENSCMIP00000034287	ENSCMIP00000011369	Uncharacterized protein.	Uncharacterized protein.	0.799