STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103174029Uncharacterized protein. (76 aa)    
Predicted Functional Partners:
atm
Non-specific serine/threonine protein kinase.
   
 
 0.668
ENSCMIP00000017989
BRCT domain-containing protein.
    
 0.615
tp53bp1
Uncharacterized protein.
    
 0.615
pias4
E3 SUMO-protein ligase PIAS4.
    
 0.586
arl1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
  0.580
ENSCMIP00000009202
FHA domain-containing protein.
   
 0.570
Paxip1
BRCT domain-containing protein.
   
 0.570
ENSCMIP00000013697
BRCT domain-containing protein.
   
 0.570
bard1
Uncharacterized protein.
    
 0.570
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.558
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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