hectd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

hectd1

Uncharacterized protein. (2569 aa)

Predicted Functional Partners:

trip12

0.840

ubr3

0.633

uba3

0.619

ubr4

0.536

birc6

0.512

apc2

0.457

uba52

0.414

usp47

0.411

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
apc2	hectd1	ENSCMIP00000006641	ENSCMIP00000006252	Uncharacterized protein.	Uncharacterized protein.	0.457
birc6	hectd1	ENSCMIP00000047889	ENSCMIP00000006252	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.512
birc6	trip12	ENSCMIP00000047889	ENSCMIP00000016712	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Putative E3 ubiquitin-protein ligase TRIP12.	0.867
birc6	uba3	ENSCMIP00000047889	ENSCMIP00000014509	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-activating enzyme 3.	0.974
birc6	uba52	ENSCMIP00000047889	ENSCMIP00000012025	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal protein L40-like isoform 1.	0.994
birc6	ubr4	ENSCMIP00000047889	ENSCMIP00000012632	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBR-type domain-containing protein.	0.456
hectd1	apc2	ENSCMIP00000006252	ENSCMIP00000006641	Uncharacterized protein.	Uncharacterized protein.	0.457
hectd1	birc6	ENSCMIP00000006252	ENSCMIP00000047889	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.512
hectd1	trip12	ENSCMIP00000006252	ENSCMIP00000016712	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase TRIP12.	0.840
hectd1	uba3	ENSCMIP00000006252	ENSCMIP00000014509	Uncharacterized protein.	Ubiquitin-activating enzyme 3.	0.619
hectd1	uba52	ENSCMIP00000006252	ENSCMIP00000012025	Uncharacterized protein.	Ribosomal protein L40-like isoform 1.	0.414
hectd1	ubr3	ENSCMIP00000006252	ENSCMIP00000025302	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.633
hectd1	ubr4	ENSCMIP00000006252	ENSCMIP00000012632	Uncharacterized protein.	UBR-type domain-containing protein.	0.536
hectd1	usp47	ENSCMIP00000006252	ENSCMIP00000004811	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.411
trip12	birc6	ENSCMIP00000016712	ENSCMIP00000047889	Putative E3 ubiquitin-protein ligase TRIP12.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.867
trip12	hectd1	ENSCMIP00000016712	ENSCMIP00000006252	Putative E3 ubiquitin-protein ligase TRIP12.	Uncharacterized protein.	0.840
trip12	uba3	ENSCMIP00000016712	ENSCMIP00000014509	Putative E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-activating enzyme 3.	0.986
trip12	uba52	ENSCMIP00000016712	ENSCMIP00000012025	Putative E3 ubiquitin-protein ligase TRIP12.	Ribosomal protein L40-like isoform 1.	0.966
trip12	ubr3	ENSCMIP00000016712	ENSCMIP00000025302	Putative E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.471
trip12	ubr4	ENSCMIP00000016712	ENSCMIP00000012632	Putative E3 ubiquitin-protein ligase TRIP12.	UBR-type domain-containing protein.	0.683