coil protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

coil

Coilin_N domain-containing protein. (577 aa)

Predicted Functional Partners:

psme3

0.944

sart3

0.927

LOC103182025

0.868

LOC103182694

0.868

LOC103173934

0.865

snrpb

0.830

ENSCMIP00000048806

0.830

atxn1

0.743

nolc1

0.728

tgs1

0.713

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000048806	LOC103182025	ENSCMIP00000048806	ENSCMIP00000011281	Sm domain-containing protein.	Uncharacterized protein.	0.761
ENSCMIP00000048806	LOC103182694	ENSCMIP00000048806	ENSCMIP00000017960	Sm domain-containing protein.	Tudor domain-containing protein.	0.761
ENSCMIP00000048806	coil	ENSCMIP00000048806	ENSCMIP00000006260	Sm domain-containing protein.	Coilin_N domain-containing protein.	0.830
ENSCMIP00000048806	sart3	ENSCMIP00000048806	ENSCMIP00000028433	Sm domain-containing protein.	Uncharacterized protein.	0.603
ENSCMIP00000048806	tgs1	ENSCMIP00000048806	ENSCMIP00000038606	Sm domain-containing protein.	Uncharacterized protein.	0.697
LOC103173934	LOC103182025	ENSCMIP00000005578	ENSCMIP00000011281	Uncharacterized protein.	Uncharacterized protein.	0.534
LOC103173934	LOC103182694	ENSCMIP00000005578	ENSCMIP00000017960	Uncharacterized protein.	Tudor domain-containing protein.	0.534
LOC103173934	coil	ENSCMIP00000005578	ENSCMIP00000006260	Uncharacterized protein.	Coilin_N domain-containing protein.	0.865
LOC103173934	nolc1	ENSCMIP00000005578	ENSCMIP00000011165	Uncharacterized protein.	LisH domain-containing protein.	0.463
LOC103173934	tgs1	ENSCMIP00000005578	ENSCMIP00000038606	Uncharacterized protein.	Uncharacterized protein.	0.483
LOC103182025	ENSCMIP00000048806	ENSCMIP00000011281	ENSCMIP00000048806	Uncharacterized protein.	Sm domain-containing protein.	0.761
LOC103182025	LOC103173934	ENSCMIP00000011281	ENSCMIP00000005578	Uncharacterized protein.	Uncharacterized protein.	0.534
LOC103182025	coil	ENSCMIP00000011281	ENSCMIP00000006260	Uncharacterized protein.	Coilin_N domain-containing protein.	0.868
LOC103182025	snrpb	ENSCMIP00000011281	ENSCMIP00000034680	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.761
LOC103182025	tgs1	ENSCMIP00000011281	ENSCMIP00000038606	Uncharacterized protein.	Uncharacterized protein.	0.620
LOC103182694	ENSCMIP00000048806	ENSCMIP00000017960	ENSCMIP00000048806	Tudor domain-containing protein.	Sm domain-containing protein.	0.761
LOC103182694	LOC103173934	ENSCMIP00000017960	ENSCMIP00000005578	Tudor domain-containing protein.	Uncharacterized protein.	0.534
LOC103182694	coil	ENSCMIP00000017960	ENSCMIP00000006260	Tudor domain-containing protein.	Coilin_N domain-containing protein.	0.868
LOC103182694	snrpb	ENSCMIP00000017960	ENSCMIP00000034680	Tudor domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.761
LOC103182694	tgs1	ENSCMIP00000017960	ENSCMIP00000038606	Tudor domain-containing protein.	Uncharacterized protein.	0.620