gpm6a protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fitm2	gpm6a	ENSCMIP00000029990	ENSCMIP00000006297	Uncharacterized protein.	Uncharacterized protein.	0.556
LOC103175403	gpm6a	ENSCMIP00000044107	ENSCMIP00000006297	Uncharacterized protein.	Uncharacterized protein.	0.658
LOC103190781	gpm6a	ENSCMIP00000007521	ENSCMIP00000006297	Uncharacterized protein.	Uncharacterized protein.	0.614
LOC103190781	mbp	ENSCMIP00000007521	ENSCMIP00000017201	Uncharacterized protein.	Myelin basic protein-like protein.	0.641
LOC103190781	stmn2	ENSCMIP00000007521	ENSCMIP00000002583	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.464
gpm6a	Fitm2	ENSCMIP00000006297	ENSCMIP00000029990	Uncharacterized protein.	Uncharacterized protein.	0.556
gpm6a	LOC103175403	ENSCMIP00000006297	ENSCMIP00000044107	Uncharacterized protein.	Uncharacterized protein.	0.658
gpm6a	LOC103190781	ENSCMIP00000006297	ENSCMIP00000007521	Uncharacterized protein.	Uncharacterized protein.	0.614
gpm6a	hacd4	ENSCMIP00000006297	ENSCMIP00000027085	Uncharacterized protein.	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	0.668
gpm6a	map2	ENSCMIP00000006297	ENSCMIP00000033131	Uncharacterized protein.	Microtubule-associated protein.	0.614
gpm6a	mbp	ENSCMIP00000006297	ENSCMIP00000017201	Uncharacterized protein.	Myelin basic protein-like protein.	0.712
gpm6a	slc31a2	ENSCMIP00000006297	ENSCMIP00000015309	Uncharacterized protein.	Putative low affinity copper uptake protein 2-like protein.	0.554
gpm6a	stmn2	ENSCMIP00000006297	ENSCMIP00000002583	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.548
gpm6a	tspan7	ENSCMIP00000006297	ENSCMIP00000024239	Uncharacterized protein.	Tetraspanin.	0.682
gpm6a	upk1b	ENSCMIP00000006297	ENSCMIP00000022061	Uncharacterized protein.	Tetraspanin.	0.709
hacd4	gpm6a	ENSCMIP00000027085	ENSCMIP00000006297	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	Uncharacterized protein.	0.668
map2	gpm6a	ENSCMIP00000033131	ENSCMIP00000006297	Microtubule-associated protein.	Uncharacterized protein.	0.614
map2	mbp	ENSCMIP00000033131	ENSCMIP00000017201	Microtubule-associated protein.	Myelin basic protein-like protein.	0.641
map2	stmn2	ENSCMIP00000033131	ENSCMIP00000002583	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.464
mbp	LOC103190781	ENSCMIP00000017201	ENSCMIP00000007521	Myelin basic protein-like protein.	Uncharacterized protein.	0.641