mtif2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mtif2

Tr-type G domain-containing protein. (712 aa)

Predicted Functional Partners:

mrps12

0.903

mrpl13

0.878

mrps5

0.875

rps3

0.872

mrps6

0.869

mrps11

0.856

imp3

0.854

fau

0.844

mrps9

0.844

mrps16

0.834

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fau	imp3	ENSCMIP00000005942	ENSCMIP00000008514	Ubiquitin-like domain-containing protein.	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	0.998
fau	mrpl13	ENSCMIP00000005942	ENSCMIP00000023773	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.994
fau	mrps11	ENSCMIP00000005942	ENSCMIP00000025900	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.992
fau	mrps12	ENSCMIP00000005942	ENSCMIP00000009162	Ubiquitin-like domain-containing protein.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.998
fau	mrps5	ENSCMIP00000005942	ENSCMIP00000034977	Ubiquitin-like domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.995
fau	mtif2	ENSCMIP00000005942	ENSCMIP00000006313	Ubiquitin-like domain-containing protein.	Tr-type G domain-containing protein.	0.844
fau	rps3	ENSCMIP00000005942	ENSCMIP00000043843	Ubiquitin-like domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
imp3	fau	ENSCMIP00000008514	ENSCMIP00000005942	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Ubiquitin-like domain-containing protein.	0.998
imp3	mrpl13	ENSCMIP00000008514	ENSCMIP00000023773	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.909
imp3	mrps11	ENSCMIP00000008514	ENSCMIP00000025900	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.913
imp3	mrps12	ENSCMIP00000008514	ENSCMIP00000009162	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.945
imp3	mrps16	ENSCMIP00000008514	ENSCMIP00000014945	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein.	0.964
imp3	mrps5	ENSCMIP00000008514	ENSCMIP00000034977	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.945
imp3	mrps6	ENSCMIP00000008514	ENSCMIP00000038846	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein.	0.964
imp3	mrps9	ENSCMIP00000008514	ENSCMIP00000041214	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein.	0.967
imp3	mtif2	ENSCMIP00000008514	ENSCMIP00000006313	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Tr-type G domain-containing protein.	0.854
imp3	rps3	ENSCMIP00000008514	ENSCMIP00000043843	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.984
mrpl13	fau	ENSCMIP00000023773	ENSCMIP00000005942	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ubiquitin-like domain-containing protein.	0.994
mrpl13	imp3	ENSCMIP00000023773	ENSCMIP00000008514	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	0.909
mrpl13	mrps11	ENSCMIP00000023773	ENSCMIP00000025900	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.970