ndufaf6 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ndufaf6

Uncharacterized protein. (326 aa)

Predicted Functional Partners:

ndufaf5

0.962

ndufa10

0.833

pyroxd2

0.824

retsat

0.824

ndufaf4

0.819

ndufs3

0.799

erg28

0.796

ndufaf1

0.791

tmem186

0.773

ENSCMIP00000037909

0.771

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000037909	ndufa10	ENSCMIP00000037909	ENSCMIP00000030638	Complex1_49kDa domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
ENSCMIP00000037909	ndufaf1	ENSCMIP00000037909	ENSCMIP00000004300	Complex1_49kDa domain-containing protein.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex, assembly factor 1.	0.836
ENSCMIP00000037909	ndufaf4	ENSCMIP00000037909	ENSCMIP00000036664	Complex1_49kDa domain-containing protein.	Uncharacterized protein.	0.894
ENSCMIP00000037909	ndufaf5	ENSCMIP00000037909	ENSCMIP00000049137	Complex1_49kDa domain-containing protein.	Methyltransf_11 domain-containing protein.	0.844
ENSCMIP00000037909	ndufaf6	ENSCMIP00000037909	ENSCMIP00000006354	Complex1_49kDa domain-containing protein.	Uncharacterized protein.	0.771
ENSCMIP00000037909	ndufs3	ENSCMIP00000037909	ENSCMIP00000037975	Complex1_49kDa domain-containing protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
ENSCMIP00000037909	tmem186	ENSCMIP00000037909	ENSCMIP00000024140	Complex1_49kDa domain-containing protein.	Uncharacterized protein.	0.624
erg28	ndufaf5	ENSCMIP00000028868	ENSCMIP00000049137	Uncharacterized protein.	Methyltransf_11 domain-containing protein.	0.426
erg28	ndufaf6	ENSCMIP00000028868	ENSCMIP00000006354	Uncharacterized protein.	Uncharacterized protein.	0.796
ndufa10	ENSCMIP00000037909	ENSCMIP00000030638	ENSCMIP00000037909	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Complex1_49kDa domain-containing protein.	0.999
ndufa10	ndufaf1	ENSCMIP00000030638	ENSCMIP00000004300	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex, assembly factor 1.	0.804
ndufa10	ndufaf4	ENSCMIP00000030638	ENSCMIP00000036664	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.758
ndufa10	ndufaf5	ENSCMIP00000030638	ENSCMIP00000049137	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Methyltransf_11 domain-containing protein.	0.701
ndufa10	ndufaf6	ENSCMIP00000030638	ENSCMIP00000006354	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.833
ndufa10	ndufs3	ENSCMIP00000030638	ENSCMIP00000037975	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.997
ndufa10	pyroxd2	ENSCMIP00000030638	ENSCMIP00000014614	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Amino_oxidase domain-containing protein.	0.545
ndufa10	tmem186	ENSCMIP00000030638	ENSCMIP00000024140	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.613
ndufaf1	ENSCMIP00000037909	ENSCMIP00000004300	ENSCMIP00000037909	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex, assembly factor 1.	Complex1_49kDa domain-containing protein.	0.836
ndufaf1	ndufa10	ENSCMIP00000004300	ENSCMIP00000030638	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex, assembly factor 1.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.804
ndufaf1	ndufaf4	ENSCMIP00000004300	ENSCMIP00000036664	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex, assembly factor 1.	Uncharacterized protein.	0.895