catspere protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

catspere

Uncharacterized protein. (725 aa)

Predicted Functional Partners:

catsperb

0.924

catsper3

0.888

Catsperd

0.858

catsperg

0.837

ENSCMIP00000042711

0.797

catsper2

0.694

cacna1g

0.674

ENSCMIP00000017623

0.674

LOC103190512

0.674

efcab9

0.633

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Catsperd	ENSCMIP00000017623	ENSCMIP00000020870	ENSCMIP00000017623	Uncharacterized protein.	Uncharacterized protein.	0.781
Catsperd	ENSCMIP00000042711	ENSCMIP00000020870	ENSCMIP00000042711	Uncharacterized protein.	Ion_trans domain-containing protein.	0.873
Catsperd	LOC103190512	ENSCMIP00000020870	ENSCMIP00000032851	Uncharacterized protein.	Uncharacterized protein.	0.781
Catsperd	cacna1g	ENSCMIP00000020870	ENSCMIP00000005639	Uncharacterized protein.	Uncharacterized protein.	0.781
Catsperd	catsper2	ENSCMIP00000020870	ENSCMIP00000004856	Uncharacterized protein.	Ion_trans domain-containing protein.	0.983
Catsperd	catsper3	ENSCMIP00000020870	ENSCMIP00000012760	Uncharacterized protein.	Ion_trans domain-containing protein.	0.986
Catsperd	catsperb	ENSCMIP00000020870	ENSCMIP00000030018	Uncharacterized protein.	Uncharacterized protein.	0.993
Catsperd	catspere	ENSCMIP00000020870	ENSCMIP00000006357	Uncharacterized protein.	Uncharacterized protein.	0.858
Catsperd	catsperg	ENSCMIP00000020870	ENSCMIP00000006201	Uncharacterized protein.	Uncharacterized protein.	0.980
Catsperd	efcab9	ENSCMIP00000020870	ENSCMIP00000007994	Uncharacterized protein.	Uncharacterized protein.	0.905
ENSCMIP00000017623	Catsperd	ENSCMIP00000017623	ENSCMIP00000020870	Uncharacterized protein.	Uncharacterized protein.	0.781
ENSCMIP00000017623	ENSCMIP00000042711	ENSCMIP00000017623	ENSCMIP00000042711	Uncharacterized protein.	Ion_trans domain-containing protein.	0.540
ENSCMIP00000017623	LOC103190512	ENSCMIP00000017623	ENSCMIP00000032851	Uncharacterized protein.	Uncharacterized protein.	0.961
ENSCMIP00000017623	cacna1g	ENSCMIP00000017623	ENSCMIP00000005639	Uncharacterized protein.	Uncharacterized protein.	0.548
ENSCMIP00000017623	catsper2	ENSCMIP00000017623	ENSCMIP00000004856	Uncharacterized protein.	Ion_trans domain-containing protein.	0.811
ENSCMIP00000017623	catsper3	ENSCMIP00000017623	ENSCMIP00000012760	Uncharacterized protein.	Ion_trans domain-containing protein.	0.790
ENSCMIP00000017623	catsperb	ENSCMIP00000017623	ENSCMIP00000030018	Uncharacterized protein.	Uncharacterized protein.	0.804
ENSCMIP00000017623	catspere	ENSCMIP00000017623	ENSCMIP00000006357	Uncharacterized protein.	Uncharacterized protein.	0.674
ENSCMIP00000017623	catsperg	ENSCMIP00000017623	ENSCMIP00000006201	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSCMIP00000017623	efcab9	ENSCMIP00000017623	ENSCMIP00000007994	Uncharacterized protein.	Uncharacterized protein.	0.409