unc5b protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

unc5b

Uncharacterized protein. (942 aa)

Predicted Functional Partners:

ntn4

0.894

LOC103176802

0.894

ntn3

0.872

ntn1

0.872

neo1

0.802

dcc

0.802

flrt3

0.739

slitrk3

0.695

pcsk2

0.657

flrt1

0.635

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103176802	dcc	ENSCMIP00000047773	ENSCMIP00000024261	Uncharacterized protein.	Uncharacterized protein.	0.784
LOC103176802	neo1	ENSCMIP00000047773	ENSCMIP00000024005	Uncharacterized protein.	Uncharacterized protein.	0.784
LOC103176802	ntn4	ENSCMIP00000047773	ENSCMIP00000035714	Uncharacterized protein.	Uncharacterized protein.	0.549
LOC103176802	unc5b	ENSCMIP00000047773	ENSCMIP00000006373	Uncharacterized protein.	Uncharacterized protein.	0.894
dcc	LOC103176802	ENSCMIP00000024261	ENSCMIP00000047773	Uncharacterized protein.	Uncharacterized protein.	0.784
dcc	ntn1	ENSCMIP00000024261	ENSCMIP00000043878	Uncharacterized protein.	Uncharacterized protein.	0.894
dcc	ntn3	ENSCMIP00000024261	ENSCMIP00000015592	Uncharacterized protein.	Uncharacterized protein.	0.894
dcc	ntn4	ENSCMIP00000024261	ENSCMIP00000035714	Uncharacterized protein.	Uncharacterized protein.	0.784
dcc	unc5b	ENSCMIP00000024261	ENSCMIP00000006373	Uncharacterized protein.	Uncharacterized protein.	0.802
flrt1	unc5b	ENSCMIP00000035604	ENSCMIP00000006373	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.635
flrt3	unc5b	ENSCMIP00000049093	ENSCMIP00000006373	Uncharacterized protein.	Uncharacterized protein.	0.739
neo1	LOC103176802	ENSCMIP00000024005	ENSCMIP00000047773	Uncharacterized protein.	Uncharacterized protein.	0.784
neo1	ntn1	ENSCMIP00000024005	ENSCMIP00000043878	Uncharacterized protein.	Uncharacterized protein.	0.894
neo1	ntn3	ENSCMIP00000024005	ENSCMIP00000015592	Uncharacterized protein.	Uncharacterized protein.	0.894
neo1	ntn4	ENSCMIP00000024005	ENSCMIP00000035714	Uncharacterized protein.	Uncharacterized protein.	0.784
neo1	unc5b	ENSCMIP00000024005	ENSCMIP00000006373	Uncharacterized protein.	Uncharacterized protein.	0.802
ntn1	dcc	ENSCMIP00000043878	ENSCMIP00000024261	Uncharacterized protein.	Uncharacterized protein.	0.894
ntn1	neo1	ENSCMIP00000043878	ENSCMIP00000024005	Uncharacterized protein.	Uncharacterized protein.	0.894
ntn1	unc5b	ENSCMIP00000043878	ENSCMIP00000006373	Uncharacterized protein.	Uncharacterized protein.	0.872
ntn3	dcc	ENSCMIP00000015592	ENSCMIP00000024261	Uncharacterized protein.	Uncharacterized protein.	0.894