Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam120bXPG_I_2 domain-containing protein. (706 aa)    
Predicted Functional Partners:
psmb1
Proteasome subunit beta.
     
 0.784
ENSCMIP00000016857
MYND-type domain-containing protein.
      
 0.623
pdcd2
Programmed cell death 2.
      
 0.623
fancm
Uncharacterized protein.
    
 0.619
ak7
Uncharacterized protein.
    
 
 0.608
nsmce1
RING-type domain-containing protein.
      
 0.593
arid4b
ARID domain-containing protein.
    
 0.592
LOC103184378
Uncharacterized protein.
      
 0.550
gck
Uncharacterized protein.
    
 0.544
ddx20
Uncharacterized protein.
   
 0.535
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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