Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103191382Uncharacterized protein. (182 aa)    
Predicted Functional Partners:
plcb2
Phosphoinositide phospholipase C.
 
   
  0.943
LOC103191092
PH_14 domain-containing protein.
 
     0.920
plcz1
Phosphoinositide phospholipase C.
 
 
 
  0.908
LOC103171709
Phosphoinositide phospholipase C.
 
      0.900
LOC103189708
Phosphoinositide phospholipase C.
 
 
 
  0.828
plcd4
Phosphoinositide phospholipase C.
 
 
 
  0.765
LOC103182068
Uncharacterized protein.
    
 0.658
gnaq
Uncharacterized protein.
    
 0.658
gna14
Uncharacterized protein.
    
 0.658
dctn2
Uncharacterized protein.
      
 0.614
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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