Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plekhj1Uncharacterized protein. (149 aa)    
Predicted Functional Partners:
glg1
Uncharacterized protein.
      
 0.679
prepl
Uncharacterized protein.
      
 0.664
gpatch1
G-patch domain-containing protein.
      
 0.640
cenpc
CENP-C_C domain-containing protein.
     
 0.604
LOC103176159
Fanconi_A_N domain-containing protein.
    
 0.604
camkmt
Uncharacterized protein.
      
 0.588
ncoa5
RRM domain-containing protein.
     
 0.567
dbi
ACB domain-containing protein.
      
 0.564
ptprc
Uncharacterized protein.
    
 0.556
sdhd
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family.
      
 0.484
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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