Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Col22a1LAM_G_DOMAIN domain-containing protein. (320 aa)    
Predicted Functional Partners:
ENSCMIP00000006447
VWFA domain-containing protein.
 
 
  0.949
ENSCMIP00000006455
Uncharacterized protein.
 
  
  0.914
ENSCMIP00000006444
VWFA domain-containing protein.
 
  
  0.856
pcolce2
Uncharacterized protein.
    
 0.825
ENSCMIP00000041032
Uncharacterized protein.
 
  
 0.760
ENSCMIP00000039319
annotation not available
 
  
 0.757
Ak9
Uncharacterized protein.
    
   0.751
ENSCMIP00000035595
Uncharacterized protein.
    
   0.751
ENSCMIP00000045685
Uncharacterized protein.
 
  
 0.719
wdr90
Uncharacterized protein.
   
 0.680
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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