Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tcte3Uncharacterized protein. (184 aa)    
Predicted Functional Partners:
tctex1d2
Uncharacterized protein.
  
  
0.883
phf10
Uncharacterized protein.
      
 0.844
dynll1
Dynein light chain.
    
 0.843
dynll2
Dynein light chain.
    
 0.843
dync2li1
Uncharacterized protein.
   
 0.832
dynlrb2
Dynein light chain roadblock.
  
 
 0.832
wdr34
Uncharacterized protein.
    
 0.813
tctex1d1
Uncharacterized protein.
  
  
0.799
topaz1
Asp_Glu_race_2 domain-containing protein.
      
 0.778
dynlrb1
Dynein light chain roadblock.
  
 
 0.775
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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