pcbd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pcbd1

Uncharacterized protein. (109 aa)

Predicted Functional Partners:

pah

0.972

tph2

0.971

tph1

0.971

th

0.970

LOC103179919

0.970

pcbd2

0.901

hnf1a

0.832

hnf1b

0.742

afmid

0.732

got2

0.590

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103179919	got2	ENSCMIP00000026021	ENSCMIP00000012577	BH4_AAA_HYDROXYL_2 domain-containing protein.	Aspartate aminotransferase.	0.938
LOC103179919	pah	ENSCMIP00000026021	ENSCMIP00000025891	BH4_AAA_HYDROXYL_2 domain-containing protein.	Uncharacterized protein.	0.814
LOC103179919	pcbd1	ENSCMIP00000026021	ENSCMIP00000006500	BH4_AAA_HYDROXYL_2 domain-containing protein.	Uncharacterized protein.	0.970
LOC103179919	pcbd2	ENSCMIP00000026021	ENSCMIP00000012757	BH4_AAA_HYDROXYL_2 domain-containing protein.	Uncharacterized protein.	0.970
LOC103179919	th	ENSCMIP00000026021	ENSCMIP00000017608	BH4_AAA_HYDROXYL_2 domain-containing protein.	BH4_AAA_HYDROXYL_2 domain-containing protein.	0.901
afmid	pcbd1	ENSCMIP00000047801	ENSCMIP00000006500	Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.	Uncharacterized protein.	0.732
afmid	pcbd2	ENSCMIP00000047801	ENSCMIP00000012757	Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.	Uncharacterized protein.	0.732
got2	LOC103179919	ENSCMIP00000012577	ENSCMIP00000026021	Aspartate aminotransferase.	BH4_AAA_HYDROXYL_2 domain-containing protein.	0.938
got2	pah	ENSCMIP00000012577	ENSCMIP00000025891	Aspartate aminotransferase.	Uncharacterized protein.	0.938
got2	pcbd1	ENSCMIP00000012577	ENSCMIP00000006500	Aspartate aminotransferase.	Uncharacterized protein.	0.590
got2	pcbd2	ENSCMIP00000012577	ENSCMIP00000012757	Aspartate aminotransferase.	Uncharacterized protein.	0.590
got2	th	ENSCMIP00000012577	ENSCMIP00000017608	Aspartate aminotransferase.	BH4_AAA_HYDROXYL_2 domain-containing protein.	0.938
got2	tph1	ENSCMIP00000012577	ENSCMIP00000025709	Aspartate aminotransferase.	Uncharacterized protein.	0.413
got2	tph2	ENSCMIP00000012577	ENSCMIP00000002099	Aspartate aminotransferase.	Uncharacterized protein.	0.413
hnf1a	hnf1b	ENSCMIP00000017228	ENSCMIP00000027853	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.969
hnf1a	pcbd1	ENSCMIP00000017228	ENSCMIP00000006500	Homeobox domain-containing protein.	Uncharacterized protein.	0.832
hnf1a	pcbd2	ENSCMIP00000017228	ENSCMIP00000012757	Homeobox domain-containing protein.	Uncharacterized protein.	0.832
hnf1b	hnf1a	ENSCMIP00000027853	ENSCMIP00000017228	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.969
hnf1b	pcbd1	ENSCMIP00000027853	ENSCMIP00000006500	Homeobox domain-containing protein.	Uncharacterized protein.	0.742
hnf1b	pcbd2	ENSCMIP00000027853	ENSCMIP00000012757	Homeobox domain-containing protein.	Uncharacterized protein.	0.742