sh3pxd2b protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sh3pxd2b

Uncharacterized protein. (994 aa)

Predicted Functional Partners:

insc

0.742

hmmr

0.695

ankrd6

0.588

apbb3

0.584

ENSCMIP00000036159

0.576

ENSCMIP00000042148

0.576

sh3rf3

0.545

tenm2

0.532

cdc42

0.523

ENSCMIP00000021372

0.523

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000021372	sh3pxd2b	ENSCMIP00000021372	ENSCMIP00000006518	Uncharacterized protein.	Uncharacterized protein.	0.523
ENSCMIP00000036159	ENSCMIP00000042148	ENSCMIP00000036159	ENSCMIP00000042148	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.402
ENSCMIP00000036159	cdc42	ENSCMIP00000036159	ENSCMIP00000003700	TPR_REGION domain-containing protein.	Cell division control protein 42-like protein.	0.509
ENSCMIP00000036159	sh3pxd2b	ENSCMIP00000036159	ENSCMIP00000006518	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.576
ENSCMIP00000042148	ENSCMIP00000036159	ENSCMIP00000042148	ENSCMIP00000036159	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.402
ENSCMIP00000042148	cdc42	ENSCMIP00000042148	ENSCMIP00000003700	TPR_REGION domain-containing protein.	Cell division control protein 42-like protein.	0.509
ENSCMIP00000042148	sh3pxd2b	ENSCMIP00000042148	ENSCMIP00000006518	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.576
ankrd6	apbb3	ENSCMIP00000041659	ENSCMIP00000040683	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.707
ankrd6	hmmr	ENSCMIP00000041659	ENSCMIP00000012334	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.597
ankrd6	insc	ENSCMIP00000041659	ENSCMIP00000033897	ANK_REP_REGION domain-containing protein.	INSC_LBD domain-containing protein.	0.565
ankrd6	sh3pxd2b	ENSCMIP00000041659	ENSCMIP00000006518	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.588
ankrd6	tenm2	ENSCMIP00000041659	ENSCMIP00000002689	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.543
apbb3	ankrd6	ENSCMIP00000040683	ENSCMIP00000041659	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.707
apbb3	hmmr	ENSCMIP00000040683	ENSCMIP00000012334	Uncharacterized protein.	Uncharacterized protein.	0.522
apbb3	insc	ENSCMIP00000040683	ENSCMIP00000033897	Uncharacterized protein.	INSC_LBD domain-containing protein.	0.652
apbb3	sh3pxd2b	ENSCMIP00000040683	ENSCMIP00000006518	Uncharacterized protein.	Uncharacterized protein.	0.584
apbb3	tenm2	ENSCMIP00000040683	ENSCMIP00000002689	Uncharacterized protein.	Uncharacterized protein.	0.535
cdc42	ENSCMIP00000036159	ENSCMIP00000003700	ENSCMIP00000036159	Cell division control protein 42-like protein.	TPR_REGION domain-containing protein.	0.509
cdc42	ENSCMIP00000042148	ENSCMIP00000003700	ENSCMIP00000042148	Cell division control protein 42-like protein.	TPR_REGION domain-containing protein.	0.509
cdc42	sh3pxd2b	ENSCMIP00000003700	ENSCMIP00000006518	Cell division control protein 42-like protein.	Uncharacterized protein.	0.523