Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ppm1aPPM-type phosphatase domain-containing protein. (368 aa)    
Predicted Functional Partners:
map2k4
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.921
LOC103185143
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
  0.919
slc3a1
Aamy domain-containing protein.
 
 
  
 0.680
smad4
Mothers against decapentaplegic homolog.
    
 0.579
smad2
Mothers against decapentaplegic homolog.
   
 0.549
smad3
MH2 domain-containing protein.
   
 0.549
prkaa1
Non-specific serine/threonine protein kinase.
   
  0.479
prkaa2
Non-specific serine/threonine protein kinase.
   
  0.479
exoc5
Exocyst complex component 5.
      
 0.465
tmem14a
Transmembrane protein 14A-like protein.
      
 0.464
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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