STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rabgap1lUncharacterized protein. (1077 aa)    
Predicted Functional Partners:
rab1a
Uncharacterized protein.
    
 0.629
rab41
Uncharacterized protein.
    
 0.596
rab6b
Uncharacterized protein.
    
 0.596
rab6a
Uncharacterized protein.
    
 0.596
bbs9
Uncharacterized protein.
      
 0.587
pxdc1
PX domain-containing protein 1.
    
   0.567
Rab33b
Uncharacterized protein.
    
 0.567
rab19
Ras-related protein Rab-19.
    
 0.556
rab43
Uncharacterized protein.
    
 0.556
LOC103184088
VPS9 domain-containing protein.
   
 
 0.546
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.