cunh14orf39 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

cunh14orf39

Uncharacterized protein. (486 aa)

Predicted Functional Partners:

syce3

0.686

dock3

0.678

ENSCMIP00000007623

0.660

Syce2

0.637

rnf212

0.589

sycp1

0.587

smc3

0.585

hspb11

0.527

spdya

0.516

g0s2

0.483

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000007623	Syce2	ENSCMIP00000007623	ENSCMIP00000003420	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSCMIP00000007623	cunh14orf39	ENSCMIP00000007623	ENSCMIP00000006586	Uncharacterized protein.	Uncharacterized protein.	0.660
ENSCMIP00000007623	hspb11	ENSCMIP00000007623	ENSCMIP00000026723	Uncharacterized protein.	Uncharacterized protein.	0.561
ENSCMIP00000007623	smc3	ENSCMIP00000007623	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.407
ENSCMIP00000007623	spdya	ENSCMIP00000007623	ENSCMIP00000000136	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSCMIP00000007623	syce3	ENSCMIP00000007623	ENSCMIP00000047800	Uncharacterized protein.	Uncharacterized protein.	0.948
ENSCMIP00000007623	sycp1	ENSCMIP00000007623	ENSCMIP00000022114	Uncharacterized protein.	Uncharacterized protein.	0.908
Syce2	ENSCMIP00000007623	ENSCMIP00000003420	ENSCMIP00000007623	Uncharacterized protein.	Uncharacterized protein.	0.986
Syce2	cunh14orf39	ENSCMIP00000003420	ENSCMIP00000006586	Uncharacterized protein.	Uncharacterized protein.	0.637
Syce2	rnf212	ENSCMIP00000003420	ENSCMIP00000024389	Uncharacterized protein.	RING-type domain-containing protein.	0.547
Syce2	smc3	ENSCMIP00000003420	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.763
Syce2	syce3	ENSCMIP00000003420	ENSCMIP00000047800	Uncharacterized protein.	Uncharacterized protein.	0.978
Syce2	sycp1	ENSCMIP00000003420	ENSCMIP00000022114	Uncharacterized protein.	Uncharacterized protein.	0.980
cunh14orf39	ENSCMIP00000007623	ENSCMIP00000006586	ENSCMIP00000007623	Uncharacterized protein.	Uncharacterized protein.	0.660
cunh14orf39	Syce2	ENSCMIP00000006586	ENSCMIP00000003420	Uncharacterized protein.	Uncharacterized protein.	0.637
cunh14orf39	dock3	ENSCMIP00000006586	ENSCMIP00000007869	Uncharacterized protein.	Uncharacterized protein; Belongs to the DOCK family.	0.678
cunh14orf39	g0s2	ENSCMIP00000006586	ENSCMIP00000005042	Uncharacterized protein.	G0/G1switch 2.	0.483
cunh14orf39	hspb11	ENSCMIP00000006586	ENSCMIP00000026723	Uncharacterized protein.	Uncharacterized protein.	0.527
cunh14orf39	rnf212	ENSCMIP00000006586	ENSCMIP00000024389	Uncharacterized protein.	RING-type domain-containing protein.	0.589
cunh14orf39	smc3	ENSCMIP00000006586	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.585