trmt5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trmt5

tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family. (496 aa)

Predicted Functional Partners:

tyw5

0.863

dus2

0.799

pstpip2

0.794

tyw3

0.782

ENSCMIP00000028713

0.778

senp8

0.751

trmt10c

0.727

trmt11

0.720

LOC103188744

0.717

dus1l

0.717

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000028713	LOC103188744	ENSCMIP00000028713	ENSCMIP00000016538	Flavodoxin-like domain-containing protein.	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	0.446
ENSCMIP00000028713	trmt10c	ENSCMIP00000028713	ENSCMIP00000047813	Flavodoxin-like domain-containing protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.420
ENSCMIP00000028713	trmt5	ENSCMIP00000028713	ENSCMIP00000006623	Flavodoxin-like domain-containing protein.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.778
ENSCMIP00000028713	tyw3	ENSCMIP00000028713	ENSCMIP00000021422	Flavodoxin-like domain-containing protein.	TYW3 domain-containing protein.	0.940
ENSCMIP00000028713	tyw5	ENSCMIP00000028713	ENSCMIP00000029717	Flavodoxin-like domain-containing protein.	JmjC domain-containing protein.	0.709
LOC103188744	ENSCMIP00000028713	ENSCMIP00000016538	ENSCMIP00000028713	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	Flavodoxin-like domain-containing protein.	0.446
LOC103188744	dus1l	ENSCMIP00000016538	ENSCMIP00000044220	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	Uncharacterized protein.	0.661
LOC103188744	dus2	ENSCMIP00000016538	ENSCMIP00000045602	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	DRBM domain-containing protein.	0.444
LOC103188744	trmt11	ENSCMIP00000016538	ENSCMIP00000026764	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	UPF0020 domain-containing protein.	0.792
LOC103188744	trmt5	ENSCMIP00000016538	ENSCMIP00000006623	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.717
LOC103188744	tyw3	ENSCMIP00000016538	ENSCMIP00000021422	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	TYW3 domain-containing protein.	0.429
dus1l	LOC103188744	ENSCMIP00000044220	ENSCMIP00000016538	Uncharacterized protein.	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	0.661
dus1l	dus2	ENSCMIP00000044220	ENSCMIP00000045602	Uncharacterized protein.	DRBM domain-containing protein.	0.663
dus1l	trmt10c	ENSCMIP00000044220	ENSCMIP00000047813	Uncharacterized protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.663
dus1l	trmt11	ENSCMIP00000044220	ENSCMIP00000026764	Uncharacterized protein.	UPF0020 domain-containing protein.	0.881
dus1l	trmt5	ENSCMIP00000044220	ENSCMIP00000006623	Uncharacterized protein.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.717
dus2	LOC103188744	ENSCMIP00000045602	ENSCMIP00000016538	DRBM domain-containing protein.	RNA (Guanine-9-)-methyltransferase domain-containing protein 2-like protein.	0.444
dus2	dus1l	ENSCMIP00000045602	ENSCMIP00000044220	DRBM domain-containing protein.	Uncharacterized protein.	0.663
dus2	trmt10c	ENSCMIP00000045602	ENSCMIP00000047813	DRBM domain-containing protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.414
dus2	trmt11	ENSCMIP00000045602	ENSCMIP00000026764	DRBM domain-containing protein.	UPF0020 domain-containing protein.	0.419

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About