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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC103188640Geminin, DNA replication inhibitor. (226 aa)    
Predicted Functional Partners:
cdt1
CDT1 domain-containing protein.
   
 0.992
LOC103187009
DNA helicase; Belongs to the MCM family.
   
 0.888
mcm6
DNA helicase; Belongs to the MCM family.
   
 0.888
orc6
Uncharacterized protein.
   
 
 0.844
ccdc146
Uncharacterized protein.
    
   0.841
orc4
Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.
     
 0.840
fzr1
WD_REPEATS_REGION domain-containing protein.
   
 0.809
LOC103182756
Fizzy-related protein-like protein.
   
 0.809
cdc6
Uncharacterized protein.
   
 
 0.805
mcm8
MCM domain-containing protein; Belongs to the MCM family.
   
 0.778
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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