Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pusl1tRNA pseudouridine synthase. (201 aa)    
Predicted Functional Partners:
Tmem244
Uncharacterized protein.
      
 0.816
tmem141
Uncharacterized protein.
      
 0.814
rsrc1
Arginine/serine-rich coiled-coil 1.
   
  
 0.792
trub2
TruB_N domain-containing protein.
   
 0.781
trub1
Uncharacterized protein.
   
 0.721
pus7l
TRUD domain-containing protein.
   
 
 0.694
dkc1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.648
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.644
rbfa
Uncharacterized protein.
   
 
 0.599
mterf4
mTERF domain-containing protein 2-like protein.
      
 0.588
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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