Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103175367Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2571 aa)    
Predicted Functional Partners:
ctnna1
Uncharacterized protein.
   
 0.758
LOC103181503
Uncharacterized protein.
   
 0.758
LOC103178933
Uncharacterized protein.
   
 0.758
cdhr5
Uncharacterized protein.
   
0.745
cdh12
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
 
0.705
cdh18
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
     
 
0.655
LOC103175998
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
0.653
LOC103179929
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
     
 
0.649
cdh13
Uncharacterized protein.
   
 
 
0.646
ctnnb1
Uncharacterized protein.
    
 0.631
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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