Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx3TBX domain-containing protein. (441 aa)    
Predicted Functional Partners:
kntc1
Uncharacterized protein.
      
 0.676
klf2
Uncharacterized protein.
    
 
 0.629
tfcp2l1
Uncharacterized protein.
   
 
 0.609
klf4
Uncharacterized protein.
    
 
 0.589
tyr
Uncharacterized protein.
     
 0.588
bmp4
TGF_BETA_2 domain-containing protein.
    
 0.575
sox2
Transcription factor SOX-2.
    
 0.553
Nkx2-5
Homeobox domain-containing protein.
   
 0.530
drd2
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.524
drd3
D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.524
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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