Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cstaCystatin B (Stefin B); Belongs to the cystatin family. (96 aa)    
Predicted Functional Partners:
ENSCMIP00000010026
Uncharacterized protein.
    
 
 0.905
V9KYZ4_CALMI
B cell activating factor; Belongs to the tumor necrosis factor family.
    
 
 0.905
ctsb
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
   
 0.827
ENSCMIP00000001218
Propeptide_C1 domain-containing protein.
   
 0.827
ctsh
Uncharacterized protein; Belongs to the peptidase C1 family.
    
 0.640
nhlrc1
RING-type domain-containing protein.
   
  
 0.620
trappc10
Uncharacterized protein.
      
 0.601
ENSCMIP00000028713
Flavodoxin-like domain-containing protein.
      
 0.585
ENSCMIP00000043006
Uncharacterized protein.
      
 0.582
LOC103183182
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.575
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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