ndufb4 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ndufb4

NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4. (128 aa)

Predicted Functional Partners:

Ndufa6

0.999

ndufb5

0.999

Ndufb3

0.999

ndufa13

0.999

ndufs5

0.999

ndufa12

0.999

ndufa8

0.999

ndufb9

0.999

ndufs3

0.999

ndufs6

0.999

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ndufa6	Ndufb3	ENSCMIP00000003944	ENSCMIP00000008854	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufa6	ndufa12	ENSCMIP00000003944	ENSCMIP00000027155	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
Ndufa6	ndufa13	ENSCMIP00000003944	ENSCMIP00000010027	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufa6	ndufa8	ENSCMIP00000003944	ENSCMIP00000033329	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
Ndufa6	ndufb4	ENSCMIP00000003944	ENSCMIP00000006856	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4.	0.999
Ndufa6	ndufb5	ENSCMIP00000003944	ENSCMIP00000005208	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufa6	ndufb9	ENSCMIP00000003944	ENSCMIP00000034303	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 9-like protein; Belongs to the complex I LYR family.	0.999
Ndufa6	ndufs3	ENSCMIP00000003944	ENSCMIP00000037975	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
Ndufa6	ndufs5	ENSCMIP00000003944	ENSCMIP00000014940	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) iron-sulfur protein 5.	0.998
Ndufa6	ndufs6	ENSCMIP00000003944	ENSCMIP00000039308	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
Ndufb3	Ndufa6	ENSCMIP00000008854	ENSCMIP00000003944	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufb3	ndufa12	ENSCMIP00000008854	ENSCMIP00000027155	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
Ndufb3	ndufa13	ENSCMIP00000008854	ENSCMIP00000010027	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufb3	ndufa8	ENSCMIP00000008854	ENSCMIP00000033329	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
Ndufb3	ndufb4	ENSCMIP00000008854	ENSCMIP00000006856	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4.	0.999
Ndufb3	ndufb5	ENSCMIP00000008854	ENSCMIP00000005208	Uncharacterized protein.	Uncharacterized protein.	0.999
Ndufb3	ndufb9	ENSCMIP00000008854	ENSCMIP00000034303	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 9-like protein; Belongs to the complex I LYR family.	0.999
Ndufb3	ndufs3	ENSCMIP00000008854	ENSCMIP00000037975	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.998
Ndufb3	ndufs5	ENSCMIP00000008854	ENSCMIP00000014940	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) iron-sulfur protein 5.	0.992
Ndufb3	ndufs6	ENSCMIP00000008854	ENSCMIP00000039308	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999