ercc6 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ercc6

Uncharacterized protein. (1546 aa)

Predicted Functional Partners:

ercc8

0.998

xpa

0.987

ENSCMIP00000002936

0.980

LOC103174263

0.972

ercc3

0.956

polr2d

0.955

rps27a

0.947

polr2b

0.947

polr2g

0.945

LOC103177579

0.943

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002936	LOC103174263	ENSCMIP00000002936	ENSCMIP00000001946	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCMIP00000002936	ercc3	ENSCMIP00000002936	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.929
ENSCMIP00000002936	ercc6	ENSCMIP00000002936	ENSCMIP00000006870	Uncharacterized protein.	Uncharacterized protein.	0.980
ENSCMIP00000002936	ercc8	ENSCMIP00000002936	ENSCMIP00000046884	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.858
ENSCMIP00000002936	polr2b	ENSCMIP00000002936	ENSCMIP00000038862	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ENSCMIP00000002936	polr2d	ENSCMIP00000002936	ENSCMIP00000031837	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
ENSCMIP00000002936	polr2g	ENSCMIP00000002936	ENSCMIP00000002393	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCMIP00000002936	rps27a	ENSCMIP00000002936	ENSCMIP00000006356	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.703
ENSCMIP00000002936	xpa	ENSCMIP00000002936	ENSCMIP00000016243	Uncharacterized protein.	DNA repair protein complementing XP-A cells-like protein.	0.538
LOC103174263	ENSCMIP00000002936	ENSCMIP00000001946	ENSCMIP00000002936	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC103174263	LOC103177579	ENSCMIP00000001946	ENSCMIP00000011340	Uncharacterized protein.	Uncharacterized protein.	0.469
LOC103174263	ercc3	ENSCMIP00000001946	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.936
LOC103174263	ercc6	ENSCMIP00000001946	ENSCMIP00000006870	Uncharacterized protein.	Uncharacterized protein.	0.972
LOC103174263	ercc8	ENSCMIP00000001946	ENSCMIP00000046884	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.866
LOC103174263	polr2b	ENSCMIP00000001946	ENSCMIP00000038862	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC103174263	polr2d	ENSCMIP00000001946	ENSCMIP00000031837	Uncharacterized protein.	RPOL4c domain-containing protein.	0.998
LOC103174263	polr2g	ENSCMIP00000001946	ENSCMIP00000002393	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC103174263	rps27a	ENSCMIP00000001946	ENSCMIP00000006356	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.694
LOC103177579	LOC103174263	ENSCMIP00000011340	ENSCMIP00000001946	Uncharacterized protein.	Uncharacterized protein.	0.469
LOC103177579	ercc3	ENSCMIP00000011340	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.945