STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103187531Uncharacterized protein; Belongs to the intermediate filament family. (561 aa)    
Predicted Functional Partners:
casp6
Caspase 6; Belongs to the peptidase C14A family.
   
 0.957
lmnb2
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
 
0.904
lmnb1
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
 
0.902
banf1
Barrier-to-autointegration factor.
   
 0.768
lemd3
LEM domain-containing protein.
    
 0.609
sun1
SUN domain-containing protein.
    
 0.511
Sun2
SUN domain-containing protein.
    
 0.511
rbm39
Uncharacterized protein.
   
 0.491
rhof
Rho-related GTP-binding protein RhoF-like protein.
   
 
 0.465
LOC103186981
Uncharacterized protein.
   
 0.464
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.