Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103187531Uncharacterized protein; Belongs to the intermediate filament family. (561 aa)    
Predicted Functional Partners:
casp6
Caspase 6; Belongs to the peptidase C14A family.
    
 0.968
lmnb2
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
 
0.904
lmnb1
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
 
0.902
banf1
Barrier-to-autointegration factor.
    
 0.815
lemd3
LEM domain-containing protein.
    
 0.728
sun1
SUN domain-containing protein.
    
 0.673
Sun2
SUN domain-containing protein.
    
 0.673
rbm39
Uncharacterized protein.
   
 0.608
tert
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
      
 0.575
nup98
Peptidase S59 domain-containing protein.
   
 
 0.569
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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