STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab5cRas-related protein Rab-5C. (216 aa)    
Predicted Functional Partners:
LOC103184088
VPS9 domain-containing protein.
   
 0.970
rabgef1
Rab5 GDP/GTP exchange factor-like protein.
   
 0.970
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.967
eea1
FYVE-type domain-containing protein.
    
 0.935
appl1
PID domain-containing protein.
    
 
 0.887
appl2
Uncharacterized protein.
    
 
 0.887
rbsn
FYVE-type domain-containing protein.
   
 0.858
rabep1
Uncharacterized protein.
    
 0.806
gak
Uncharacterized protein.
   
 0.773
gapvd1
Uncharacterized protein.
    
 0.770
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.