Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clns1aUncharacterized protein. (225 aa)    
Predicted Functional Partners:
wdr77
Uncharacterized protein.
   
 0.999
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.989
Prmt5
PRMT5_TIM domain-containing protein.
   
 0.988
ENSCMIP00000002781
PRMT5_TIM domain-containing protein.
   
 0.988
snrpf
Sm domain-containing protein.
   
 0.985
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.983
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.976
lsm3
Sm domain-containing protein.
   
 
 0.971
lsm6
U6 snRNA-associated Sm-like protein LSm6.
   
 
 0.968
snrpg
Small nuclear ribonucleoprotein G.
   
 0.958
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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