STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nclnNicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning. (560 aa)    
Predicted Functional Partners:
ccdc47
Uncharacterized protein.
    
 
 0.927
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.900
LOC103178793
SdrD_B domain-containing protein.
    
 
 0.797
Rpl19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
    
   0.733
rpl4
Ribos_L4_asso_C domain-containing protein.
    
   0.733
sec61a2
Plug_translocon domain-containing protein.
   
 
 0.724
sec61a1
Transport protein Sec61 subunit alpha.
   
 
 0.724
rpl27a
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.688
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
   0.682
rpl15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.676
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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