STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcdh1Uncharacterized protein. (1024 aa)    
Predicted Functional Partners:
fbxw11
Uncharacterized protein.
      
 0.672
pcdh20
Uncharacterized protein.
   
  0.631
ENSCMIP00000020455
Uncharacterized protein.
 
    
 0.612
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      
 0.590
fgf18
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.567
aplp2
Amyloid-like protein 2.
    
  0.529
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.513
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.513
lhfpl2
Lipoma HMGIC fusion partner-like 2.
    
  0.494
vangl1
Vang-like protein.
    
 0.489
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.