espn protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

espn

Uncharacterized protein. (1325 aa)

Predicted Functional Partners:

whrn

0.930

grxcr2

0.796

lrrc30

0.765

fscn1

0.764

fscn2

0.764

ENSCMIP00000044021

0.750

ush1c

0.723

brca2

0.716

tspear

0.698

eps8l2

0.693

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000044021	espn	ENSCMIP00000044021	ENSCMIP00000007061	Uncharacterized protein.	Uncharacterized protein.	0.750
ENSCMIP00000044021	grxcr2	ENSCMIP00000044021	ENSCMIP00000001117	Uncharacterized protein.	Uncharacterized protein.	0.848
ENSCMIP00000044021	tspear	ENSCMIP00000044021	ENSCMIP00000012168	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.917
ENSCMIP00000044021	ush1c	ENSCMIP00000044021	ENSCMIP00000027722	Uncharacterized protein.	Uncharacterized protein.	0.747
ENSCMIP00000044021	whrn	ENSCMIP00000044021	ENSCMIP00000015558	Uncharacterized protein.	Uncharacterized protein.	0.854
brca2	espn	ENSCMIP00000046776	ENSCMIP00000007061	Tower domain-containing protein.	Uncharacterized protein.	0.716
brca2	ush1c	ENSCMIP00000046776	ENSCMIP00000027722	Tower domain-containing protein.	Uncharacterized protein.	0.870
eps8l2	espn	ENSCMIP00000027254	ENSCMIP00000007061	SH3 domain-containing protein.	Uncharacterized protein.	0.693
eps8l2	grxcr2	ENSCMIP00000027254	ENSCMIP00000001117	SH3 domain-containing protein.	Uncharacterized protein.	0.471
eps8l2	whrn	ENSCMIP00000027254	ENSCMIP00000015558	SH3 domain-containing protein.	Uncharacterized protein.	0.697
espn	ENSCMIP00000044021	ENSCMIP00000007061	ENSCMIP00000044021	Uncharacterized protein.	Uncharacterized protein.	0.750
espn	brca2	ENSCMIP00000007061	ENSCMIP00000046776	Uncharacterized protein.	Tower domain-containing protein.	0.716
espn	eps8l2	ENSCMIP00000007061	ENSCMIP00000027254	Uncharacterized protein.	SH3 domain-containing protein.	0.693
espn	fscn1	ENSCMIP00000007061	ENSCMIP00000042666	Uncharacterized protein.	Fascin.	0.764
espn	fscn2	ENSCMIP00000007061	ENSCMIP00000044674	Uncharacterized protein.	Fascin.	0.764
espn	grxcr2	ENSCMIP00000007061	ENSCMIP00000001117	Uncharacterized protein.	Uncharacterized protein.	0.796
espn	lrrc30	ENSCMIP00000007061	ENSCMIP00000036037	Uncharacterized protein.	Leucine-rich repeat-containing protein 30.	0.765
espn	tspear	ENSCMIP00000007061	ENSCMIP00000012168	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.698
espn	ush1c	ENSCMIP00000007061	ENSCMIP00000027722	Uncharacterized protein.	Uncharacterized protein.	0.723
espn	whrn	ENSCMIP00000007061	ENSCMIP00000015558	Uncharacterized protein.	Uncharacterized protein.	0.930