Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103172249UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (227 aa)    
Predicted Functional Partners:
rbx1
RING-type domain-containing protein.
   
 0.907
Ubc
Ubiquitin-like domain-containing protein.
    
 0.902
ube2r2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.900
cul1
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.891
rps27a
Ubiquitin-like domain-containing protein.
    
 0.865
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
    
 0.849
rnf7
RING-box protein 2-like protein.
   
 0.848
uba52
Ribosomal protein L40-like isoform 1.
    
 0.847
skp1
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.835
LOC103182116
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.835
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.