rhoj protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

rhoj

Uncharacterized protein. (204 aa)

Predicted Functional Partners:

itsn2

0.872

dock4

0.828

itsn1

0.797

dock9

0.774

arhgdig

0.745

arhgdia

0.745

LOC103172351

0.705

pak2

0.705

prex2

0.692

prex1

0.692

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172351	dock4	ENSCMIP00000008117	ENSCMIP00000034839	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the DOCK family.	0.558
LOC103172351	itsn2	ENSCMIP00000008117	ENSCMIP00000024182	Protein kinase domain-containing protein.	Uncharacterized protein.	0.511
LOC103172351	rhoj	ENSCMIP00000008117	ENSCMIP00000007084	Protein kinase domain-containing protein.	Uncharacterized protein.	0.705
arhgdia	itsn2	ENSCMIP00000048762	ENSCMIP00000024182	Rho GDP-dissociation inhibitor 1-like protein.	Uncharacterized protein.	0.485
arhgdia	rhoj	ENSCMIP00000048762	ENSCMIP00000007084	Rho GDP-dissociation inhibitor 1-like protein.	Uncharacterized protein.	0.745
arhgdig	itsn2	ENSCMIP00000023839	ENSCMIP00000024182	Uncharacterized protein.	Uncharacterized protein.	0.485
arhgdig	rhoj	ENSCMIP00000023839	ENSCMIP00000007084	Uncharacterized protein.	Uncharacterized protein.	0.745
dock4	LOC103172351	ENSCMIP00000034839	ENSCMIP00000008117	Uncharacterized protein; Belongs to the DOCK family.	Protein kinase domain-containing protein.	0.558
dock4	dock9	ENSCMIP00000034839	ENSCMIP00000012831	Uncharacterized protein; Belongs to the DOCK family.	Uncharacterized protein; Belongs to the DOCK family.	0.436
dock4	pak2	ENSCMIP00000034839	ENSCMIP00000032358	Uncharacterized protein; Belongs to the DOCK family.	Non-specific serine/threonine protein kinase.	0.558
dock4	rhoj	ENSCMIP00000034839	ENSCMIP00000007084	Uncharacterized protein; Belongs to the DOCK family.	Uncharacterized protein.	0.828
dock9	dock4	ENSCMIP00000012831	ENSCMIP00000034839	Uncharacterized protein; Belongs to the DOCK family.	Uncharacterized protein; Belongs to the DOCK family.	0.436
dock9	rhoj	ENSCMIP00000012831	ENSCMIP00000007084	Uncharacterized protein; Belongs to the DOCK family.	Uncharacterized protein.	0.774
itsn1	itsn2	ENSCMIP00000038775	ENSCMIP00000024182	Uncharacterized protein.	Uncharacterized protein.	0.799
itsn1	prex1	ENSCMIP00000038775	ENSCMIP00000029801	Uncharacterized protein.	Uncharacterized protein.	0.620
itsn1	prex2	ENSCMIP00000038775	ENSCMIP00000002353	Uncharacterized protein.	Uncharacterized protein.	0.620
itsn1	rhoj	ENSCMIP00000038775	ENSCMIP00000007084	Uncharacterized protein.	Uncharacterized protein.	0.797
itsn2	LOC103172351	ENSCMIP00000024182	ENSCMIP00000008117	Uncharacterized protein.	Protein kinase domain-containing protein.	0.511
itsn2	arhgdia	ENSCMIP00000024182	ENSCMIP00000048762	Uncharacterized protein.	Rho GDP-dissociation inhibitor 1-like protein.	0.485
itsn2	arhgdig	ENSCMIP00000024182	ENSCMIP00000023839	Uncharacterized protein.	Uncharacterized protein.	0.485