STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcf3ABC transporter domain-containing protein. (323 aa)    
Predicted Functional Partners:
LOC103171862
ABC transporter domain-containing protein.
 
     0.939
gcn1
Translational activator GCN1.
   
 
 0.932
LOC103190505
Uncharacterized protein.
 
 
 
 0.927
ENSCMIP00000013171
Uncharacterized protein.
 
 
 
 0.824
eif2s1
S1 motif domain-containing protein.
   
 0.738
mrpl20
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.691
eif2s3
Tr-type G domain-containing protein.
   
 0.672
mrpl27
Uncharacterized protein.
  
 
 0.670
imp3
IMP3, U3 small nucleolar ribonucleoprotein-like protein.
  
 
 0.662
rpl35
Uncharacterized protein.
   
 
 0.659
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.