Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcf3ABC transporter domain-containing protein. (323 aa)    
Predicted Functional Partners:
LOC103190505
Uncharacterized protein.
 
 
 
 0.940
LOC103171862
ABC transporter domain-containing protein.
 
     0.939
gcn1
Translational activator GCN1.
   
 
 0.876
ENSCMIP00000013171
Uncharacterized protein.
 
 
 
 0.853
eef1g
Uncharacterized protein; Belongs to the GST superfamily.
   
 
 0.744
eif2s1
S1 motif domain-containing protein.
   
 
 0.696
eif2s3
Tr-type G domain-containing protein.
   
 
 0.672
agpat2
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 
 0.660
abce1
Uncharacterized protein.
   
 
 0.632
eef2
Tr-type G domain-containing protein.
  
 
 0.621
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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