Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rabl3Uncharacterized protein. (251 aa)    
Predicted Functional Partners:
ENSCMIP00000004945
Uncharacterized protein.
      
 0.846
gtf2e1
General transcription factor IIE subunit 1.
   
 
 0.776
hspa9
Uncharacterized protein; Belongs to the heat shock protein 70 family.
  
 0.712
rab24
Ras-related protein Rab-24.
   
  
 0.692
gpr89b
Uncharacterized protein.
    
 
 0.676
rab3gap1
Uncharacterized protein.
      
 0.669
ENSCMIP00000005060
NDK domain-containing protein; Belongs to the NDK family.
   
 0.660
LOC103187939
Uncharacterized protein; Belongs to the NDK family.
   
 0.660
spryd3
B30.2/SPRY domain-containing protein.
      
 0.633
LOC103184088
VPS9 domain-containing protein.
    
 
 0.628
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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