Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paf1Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
leo1
RNA polymerase-associated protein LEO1.
   
 0.998
ctr9
TPR_REGION domain-containing protein.
   
 0.994
cdc73
Uncharacterized protein.
   
 0.993
rtf1
Plus3 domain-containing protein.
   
 0.990
wdr61
WD_REPEATS_REGION domain-containing protein.
   
 0.987
ENSCMIP00000005553
Uncharacterized protein.
 
  
  0.961
LOC103174263
Uncharacterized protein.
    
  0.915
supt5h
Transcription elongation factor SPT5.
   
 0.882
cinp
Cyclin-dependent kinase 2-interacting protein.
   
 0.876
ENSCMIP00000000775
E3 ubiquitin protein ligase.
    
 0.847
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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