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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103172839IF rod domain-containing protein; Belongs to the intermediate filament family. (171 aa)    
Predicted Functional Partners:
ENSCMIP00000022839
IF rod domain-containing protein; Belongs to the intermediate filament family.
 
      0.886
ENSCMIP00000000404
IF rod domain-containing protein; Belongs to the intermediate filament family.
 
      0.853
LOC103186981
Uncharacterized protein.
   
 0.464
banf1
Barrier-to-autointegration factor.
   
 0.464
ENSCMIP00000048089
Uncharacterized protein.
   
 0.464
rbm39
Uncharacterized protein.
    
 0.431
lemd3
LEM domain-containing protein.
    
 0.431
mbp
Myelin basic protein-like protein.
   
  
 0.416
tcap
Uncharacterized protein.
   
 
 0.411
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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