Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC103172839IF rod domain-containing protein; Belongs to the intermediate filament family. (171 aa)    
Predicted Functional Partners:
ENSCMIP00000022839
IF rod domain-containing protein; Belongs to the intermediate filament family.
 
      0.886
ENSCMIP00000000404
IF rod domain-containing protein; Belongs to the intermediate filament family.
 
      0.853
casp6
Caspase 6; Belongs to the peptidase C14A family.
    
 0.554
mbp
Myelin basic protein-like protein.
   
  
 0.527
rbm39
Uncharacterized protein.
    
 0.502
lemd3
LEM domain-containing protein.
    
 0.502
LOC103190781
Uncharacterized protein.
   
 
 0.470
map2
Microtubule-associated protein.
   
 
 0.470
ENSCMIP00000001374
Uncharacterized protein.
   
 
 0.469
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.450
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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