chchd5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

chchd5

CX9C domain-containing protein. (247 aa)

Predicted Functional Partners:

suox

0.918

Arl5c

0.629

brap

0.479

plekhs1

0.477

rundc1

0.464

chchd4

0.448

micos13

0.424

s1pr1

0.406

ikzf3

0.400

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arl5c	chchd5	ENSCMIP00000041792	ENSCMIP00000007305	Uncharacterized protein.	CX9C domain-containing protein.	0.629
Arl5c	ikzf3	ENSCMIP00000041792	ENSCMIP00000017043	Uncharacterized protein.	Uncharacterized protein.	0.414
Arl5c	s1pr1	ENSCMIP00000041792	ENSCMIP00000027017	Uncharacterized protein.	Sphingosine 1-phosphate receptor 1-like protein; Belongs to the G-protein coupled receptor 1 family.	0.422
brap	chchd5	ENSCMIP00000014725	ENSCMIP00000007305	Uncharacterized protein.	CX9C domain-containing protein.	0.479
brap	plekhs1	ENSCMIP00000014725	ENSCMIP00000024497	Uncharacterized protein.	PH domain-containing protein.	0.479
chchd4	chchd5	ENSCMIP00000047780	ENSCMIP00000007305	Mitochondrial intermembrane space import and assembly protein 40-A.	CX9C domain-containing protein.	0.448
chchd5	Arl5c	ENSCMIP00000007305	ENSCMIP00000041792	CX9C domain-containing protein.	Uncharacterized protein.	0.629
chchd5	brap	ENSCMIP00000007305	ENSCMIP00000014725	CX9C domain-containing protein.	Uncharacterized protein.	0.479
chchd5	chchd4	ENSCMIP00000007305	ENSCMIP00000047780	CX9C domain-containing protein.	Mitochondrial intermembrane space import and assembly protein 40-A.	0.448
chchd5	ikzf3	ENSCMIP00000007305	ENSCMIP00000017043	CX9C domain-containing protein.	Uncharacterized protein.	0.400
chchd5	micos13	ENSCMIP00000007305	ENSCMIP00000006790	CX9C domain-containing protein.	MICOS complex subunit MIC13; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.424
chchd5	plekhs1	ENSCMIP00000007305	ENSCMIP00000024497	CX9C domain-containing protein.	PH domain-containing protein.	0.477
chchd5	rundc1	ENSCMIP00000007305	ENSCMIP00000000167	CX9C domain-containing protein.	RUN domain-containing protein.	0.464
chchd5	s1pr1	ENSCMIP00000007305	ENSCMIP00000027017	CX9C domain-containing protein.	Sphingosine 1-phosphate receptor 1-like protein; Belongs to the G-protein coupled receptor 1 family.	0.406
chchd5	suox	ENSCMIP00000007305	ENSCMIP00000003314	CX9C domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.918
ikzf3	Arl5c	ENSCMIP00000017043	ENSCMIP00000041792	Uncharacterized protein.	Uncharacterized protein.	0.414
ikzf3	chchd5	ENSCMIP00000017043	ENSCMIP00000007305	Uncharacterized protein.	CX9C domain-containing protein.	0.400
micos13	chchd5	ENSCMIP00000006790	ENSCMIP00000007305	MICOS complex subunit MIC13; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	CX9C domain-containing protein.	0.424
plekhs1	brap	ENSCMIP00000024497	ENSCMIP00000014725	PH domain-containing protein.	Uncharacterized protein.	0.479
plekhs1	chchd5	ENSCMIP00000024497	ENSCMIP00000007305	PH domain-containing protein.	CX9C domain-containing protein.	0.477