Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trmt12SAM_MT_TRM5_TYW2 domain-containing protein. (412 aa)    
Predicted Functional Partners:
trmt112
Uncharacterized protein.
   
 
 0.923
yrdc
YrdC-like domain-containing protein.
   
  
 0.906
dus1l
Uncharacterized protein.
   
  
 0.905
hspa4
Uncharacterized protein.
    
   0.889
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
   
  
 0.882
trmu
Mitochondrial tRNA-specific 2-thiouridylase 1-like protein.
   
  
 0.866
tyw3
TYW3 domain-containing protein.
 
 
 0.821
trmt11
UPF0020 domain-containing protein.
   
  
 0.817
tyw5
JmjC domain-containing protein.
 
    
 0.816
trmt10c
SAM-dependent MTase TRM10-type domain-containing protein.
   
  
 0.814
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: medium (54%) [HD]